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  title    = "Database of genomic biomarkers for cancer drugs and clinical
              targetability in solid tumors",
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              Stephen and Guinney, Justin",
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}

@ARTICLE{Nakken2021-mb,
  title    = "Cancer Predisposition Sequencing Reporter ({CPSR)}: A flexible
              variant report engine for high-throughput germline screening in
              cancer",
  author   = "Nakken, Sigve and Saveliev, Vladislav and Hofmann, Oliver and
              M{\o}ller, P{\aa}l and Myklebost, Ola and Hovig, Eivind",
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@ARTICLE{Amendola2015-ux,
  title   = "Actionable exomic incidental findings in 6503 participants:
             challenges of variant classification",
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@ARTICLE{Amendola2016-pu,
   title    = "Performance of {ACMG-AMP} {Variant-Interpretation} Guidelines
               among Nine Laboratories in the Clinical Sequencing Exploratory
               Research Consortium",
   author   = "Amendola, Laura M and Jarvik, Gail P and Leo, Michael C and
               McLaughlin, Heather M and Akkari, Yassmine and Amaral, Michelle D
               and Berg, Jonathan S and Biswas, Sawona and Bowling, Kevin M and
               Conlin, Laura K and Cooper, Greg M and Dorschner, Michael O and
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               Green, Robert C and Hart, Ragan and Horton, Carrie and Johnston,
               Jennifer J and Lebo, Matthew S and Milosavljevic, Aleksandar and
               Ou, Jeffrey and Pak, Christine M and Patel, Ronak Y and Punj,
               Sumit and Richards, Carolyn Sue and Salama, Joseph and Strande,
               Natasha T and Yang, Yaping and Plon, Sharon E and Biesecker,
               Leslie G and Rehm, Heidi L",
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   language = "en"
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@ARTICLE{Maxwell2016-mr,
  title    = "Evaluation of {ACMG-Guideline-Based} Variant Classification of
              Cancer Susceptibility and {Non-Cancer-Associated} Genes in
              Families Affected by Breast Cancer",
  author   = "Maxwell, Kara N and Hart, Steven N and Vijai, Joseph and
              Schrader, Kasmintan A and Slavin, Thomas P and Thomas, Tinu and
              Wubbenhorst, Bradley and Ravichandran, Vignesh and Moore, Raymond
              M and Hu, Chunling and Guidugli, Lucia and Wenz, Brandon and
              Domchek, Susan M and Robson, Mark E and Szabo, Csilla and
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              Couch, Fergus J and Nathanson, Katherine L",
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}


@ARTICLE{Huang2018-ah,
  title    = "Pathogenic Germline Variants in 10,389 Adult Cancers",
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              I and Wang, Jiayin and Oh, Clara and Paczkowska, Marta and
              Reynolds, Sheila and Wyczalkowski, Matthew A and Oak, Ninad and
              Scott, Adam D and Krassowski, Michal and Cherniack, Andrew D and
              Houlahan, Kathleen E and Jayasinghe, Reyka and Wang, Liang-Bo and
              Zhou, Daniel Cui and Liu, Di and Cao, Song and Kim, Young Won and
              Koire, Amanda and McMichael, Joshua F and Hucthagowder,
              Vishwanathan and Kim, Tae-Beom and Hahn, Abigail and Wang, Chen
              and McLellan, Michael D and Al-Mulla, Fahd and Johnson, Kimberly
              J and {Cancer Genome Atlas Research Network} and Lichtarge,
              Olivier and Boutros, Paul C and Raphael, Benjamin and Lazar,
              Alexander J and Zhang, Wei and Wendl, Michael C and Govindan,
              Ramaswamy and Jain, Sanjay and Wheeler, David and Kulkarni,
              Shashikant and Dipersio, John F and Reimand, J{\"u}ri and
              Meric-Bernstam, Funda and Chen, Ken and Shmulevich, Ilya and
              Plon, Sharon E and Chen, Feng and Ding, Li",
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  url      =  "https://doi.org/10.1016/j.cell.2018.03.039",
  keywords = "LOH; cancer predisposition; germline and somatic genomes; variant
              pathogenicity",
  language = "en"
}

@ARTICLE{Richards2015-kj,
  title    = "Standards and guidelines for the interpretation of sequence
              variants: a joint consensus recommendation of the American
              College of Medical Genetics and Genomics and the Association for
              Molecular Pathology",
  author   = "Richards, Sue and Aziz, Nazneen and Bale, Sherri and Bick, David
              and Das, Soma and Gastier-Foster, Julie and Grody, Wayne W and
              Hegde, Madhuri and Lyon, Elaine and Spector, Elaine and
              Voelkerding, Karl and Rehm, Heidi L and {ACMG Laboratory Quality
              Assurance Committee}",
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  language = "en"
}

@ARTICLE{Li2017-ew,
  title    = "Standards and Guidelines for the Interpretation and Reporting of
              Sequence Variants in Cancer: A Joint Consensus Recommendation of
              the Association for Molecular Pathology, American Society of
              Clinical Oncology, and College of American Pathologists",
  author   = "Li, Marilyn M and Datto, Michael and Duncavage, Eric J and
              Kulkarni, Shashikant and Lindeman, Neal I and Roy, Somak and
              Tsimberidou, Apostolia M and Vnencak-Jones, Cindy L and Wolff,
              Daynna J and Younes, Anas and Nikiforova, Marina N",
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  language = "en"
}



@ARTICLE{Martin2019-nq,
  title    = "{PanelApp} crowdsources expert knowledge to establish consensus
              diagnostic gene panels",
  author   = "Martin, Antonio Rueda and Williams, Eleanor and Foulger, Rebecca
              E and Leigh, Sarah and Daugherty, Louise C and Niblock, Olivia
              and Leong, Ivone U S and Smith, Katherine R and Gerasimenko, Oleg
              and Haraldsdottir, Eik and Thomas, Ellen and Scott, Richard H and
              Baple, Emma and Tucci, Arianna and Brittain, Helen and de Burca,
              Anna and Iba{\~n}ez, Kristina and Kasperaviciute, Dalia and
              Smedley, Damian and Caulfield, Mark and Rendon, Augusto and
              McDonagh, Ellen M",
  journal  = "Nat. Genet.",
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  language = "en"
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@ARTICLE{Nykamp2017-rj,
  title     = "Sherloc: a comprehensive refinement of the {ACMG--AMP} variant
               classification criteria",
  author    = "Nykamp, Keith and Anderson, Michael and Powers, Martin and
               Garcia, John and Herrera, Blanca and Ho, Yuan-Yuan and
               Kobayashi, Yuya and Patil, Nila and Thusberg, Janita and
               Westbrook, Marjorie and {The Invitae Clinical Genomics Group}
               and Topper, Scott",
  journal   = "Genet. Med.",
  publisher = "The Author(s)",
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  year      =  2017,
  url       = "https://doi.org/10.1038/gim.2017.37"
}

@ARTICLE{Griffith2017-do,
  title    = "{CIViC} is a community knowledgebase for expert crowdsourcing the
              clinical interpretation of variants in cancer",
  author   = "Griffith, Malachi and Spies, Nicholas C and Krysiak, Kilannin and
              McMichael, Joshua F and Coffman, Adam C and Danos, Arpad M and
              Ainscough, Benjamin J and Ramirez, Cody A and Rieke, Damian T and
              Kujan, Lynzey and Barnell, Erica K and Wagner, Alex H and
              Skidmore, Zachary L and Wollam, Amber and Liu, Connor J and
              Jones, Martin R and Bilski, Rachel L and Lesurf, Robert and Feng,
              Yan-Yang and Shah, Nakul M and Bonakdar, Melika and Trani, Lee
              and Matlock, Matthew and Ramu, Avinash and Campbell, Katie M and
              Spies, Gregory C and Graubert, Aaron P and Gangavarapu, Karthik
              and Eldred, James M and Larson, David E and Walker, Jason R and
              Good, Benjamin M and Wu, Chunlei and Su, Andrew I and Dienstmann,
              Rodrigo and Margolin, Adam A and Tamborero, David and
              Lopez-Bigas, Nuria and Jones, Steven J M and Bose, Ron and
              Spencer, David H and Wartman, Lukas D and Wilson, Richard K and
              Mardis, Elaine R and Griffith, Obi L",
  journal  = "Nat. Genet.",
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  url      = "http://dx.doi.org/10.1038/ng.3774",
  language = "en"
}
